;;(scroll-bar-mode -1)
;;(tool-bar-mode -1)   
;;(tooltip-mode -1)
;;(menu-bar-mode -1)
(require 'package)
(add-to-list 'package-archives '("melpa" . "https://melpa.org/packages/") t)
;; Comment/uncomment this line to enable MELPA Stable if desired.  See `package-archive-priorities`
;; and `package-pinned-packages`. Most users will not need or want to do this.
;;(add-to-list 'package-archives '("melpa-stable" . "https://stable.melpa.org/packages/") t)
(package-initialize)


(column-number-mode 't) ; show current column in status bar
(set-fringe-mode 10)

;; Indent 4 spaces by default. Use the "BSD" style for C-like languages.
(setq c-default-style
      (quote ((java-mode . "java")
              (awk-mode . "awk")
              (other . "bsd")))
      c-basic-offset 4)

;; Use 4 spaces for one tab visually.
(setq tab-width 4)

(show-paren-mode t) ; highlight matching open and close parentheses
(global-hl-line-mode) ; highlight current line
(global-visual-line-mode t) ; wrap long lines
(setq split-window-preferred-function
  'visual-fill-column-split-window-sensibly) ; wrap at window boundary

(global-whitespace-mode) ; enable whitespace handling by default
(setq
  whitespace-style ; see (apropos 'whitespace-style)
  '(face ; viz via faces
    trailing ; trailing blanks visualized
    lines-tail ; lines beyond whitespace-line-column visualized
    space-before-tab
    space-after-tab
    newline ; lines with only blanks visualized
    indentation ; spaces used for indent when config wants tabs
    empty ; empty lines at beginning or end or buffer
    )
  whitespace-line-column 100) ; column at which whitespace-mode says the line is too long
;;(set-face-attribute 'default nil :font "JetBrains Mono" :height 150)
(global-set-key (kbd "C-c c") 'org-capture)
(global-set-key (kbd "C-c a") 'org-agenda)

(setq disabled-command-function nil)
(setq inhibit-startup-screen t)
(setq visible-bell t)

; Advanced per-language checks.
(require 'flycheck)
(global-flycheck-mode 1)
(setq flycheck-checker-error-threshold 1000) ; for large go files and the escape checker

(setq flycheck-check-syntax-automatically '(mode-enabled save))

;; Backup

(setq version-control t     ;; Use version numbers for backups.
      kept-new-versions 10  ;; Number of newest versions to keep.
      kept-old-versions 0   ;; Number of oldest versions to keep.
      delete-old-versions t ;; Don't ask to delete excess backup versions.
      backup-by-copying t)  ;; Copy all files, don't rename them.
(setq vc-make-backup-files t)
(setq backup-directory-alist '(("" . "~/.emacs.d/backup")))

(setq calendar-week-start-day 1)

(setq user-full-name "Alexandre LUCAZEAU")
(setq user-mail-address	"alexandre@dri.fr")
(setq mail-user-agent 'gnus-user-agent)

;;(setq gnus-select-method
;;      '(nnimap "dri"
;;	             (nnimap-address "dri.fr")
;;	             (nnimap-server-port 143)
;;	             (nnimap-stream starttls)
;;	             (nnimap-authinfo-file "~/.authinfo.gpg")))
;;
;;(setq gnus-message-archive-group "nnimap+dri:Sent")
;;(setq gnus-gcc-mark-as-read t)
;;(setq nnmail-expiry-target "nnimap+dri:Trash")
;;(setq nnmail-expiry-wait 'immediate)
;;(setq send-mail-function 'smtpmail-send-it)
;;(setq message-send-mail-function 'smtpmail-send-it)
;;(setq smtpmail-smtp-server "dri.fr")
;;(setq smtpmail-smtp-service 587)
;;(setq message-citation-line-function 'message-insert-formatted-citation-line)
;;(setq message-citation-line-format "On %d/%m/%Y %H:%M, %N wrote:")

(defun default-web-indent-mode ()
  (setq indent-tabs-mode nil)
  (setq tab-width 2)
  (setq web-mode-markup-indent-offset 2)
  (setq web-mode-css-indent-offset 2)
  (setq web-mode-code-indent-offset 2))

(use-package doom-themes
  :init (load-theme 'doom-nord t)
  :init (doom-themes-org-config))

(use-package direnv
  :config (direnv-mode))

(use-package lsp-mode
  :config (setq lsp-keymap-prefix "C-c l")
  :config (setq lsp-signature-auto-activate t)
  :config (setq lsp-enable-on-type-formatting nil)
  :config (lsp-enable-which-key-integration t)
  :hook (lsp-mode . electric-pair-mode))

(use-package web-mode
  :mode ("\\.json\\'" . web-mode)
  :mode ("\\.html?\\'" . web-mode)
  :mode ("\\.s?css\\'" . web-mode)
  :mode ("\\.[jt]sx?\\'" . web-mode)
  :hook (web-mode . lsp-deferred)
  :hook (web-mode . default-web-indent-mode))

(use-package nix-mode
  :mode ("\\.nix\\'" . nix-mode)
  :hook (nix-mode . lsp-deferred))

(use-package rust-mode
  :hook (rust-mode . lsp-deferred)
  :config (setq rust-format-on-save t))

(use-package company
  :config (setq company-idle-delay 0.25)
  :config (setq company-minimum-prefix-length 1)
  :bind (:map company-active-map ("<tab>" . company-select-next))
  :bind (:map company-active-map ("<backtab>" . company-select-previous)))

(use-package yasnippet
  :hook (lsp-mode . yas-minor-mode)
  :hook (yas-minor-mode . yas-reload-all)
  :config (setq yas-snippet-dirs '("/etc/nixos/programs/emacs/snippets")))

(use-package prettier-js
  :after (web-mode)
  :hook (web-mode . prettier-js-mode))

(use-package smartparens
  :bind ("C-c s s" . sp-splice-sexp)
  :bind ("C-c s r" . sp-rewrap-sexp))

(use-package bbdb
  :init (bbdb-initialize 'gnus 'message)
  :init (bbdb-mua-auto-update-init 'gnus 'message)
  :config (setq bbdb-file "~/Nextcloud/PRIVE/13_Org/contacts/bbdb")
  :config (setq bbdb-mua-auto-update-p 'create))

(use-package org
  :config
  (setq org-startup-folded t)
  (setq org-agenda-files
  	  "~/Nextcloud/PRIVE/13_Org/agenda-DRI.org"
  	  "~/Nextcloud/PRIVE/13_Org/perso.org")
  (setq org-refile-use-outline-path 'file)
  (setq org-refile-targets
	'(("~/Nextcloud/PRIVE/13_Org/DRI.org" :maxlevel . 3)
	  ("~/Nextcloud/PRIVE/13_Org/perso.org" :level . 1)
  	  ("~/Nextcloud/PRIVE/13_Org/pizajoffre.org" :level . 1)))
  (setq org-todo-keywords
	'((sequence "TODO(t)" "PENDING(p)" "|" "CANCELLED(c)" "DONE(d)")))
  (setq org-todo-keyword-faces
	'(("TODO" . (:foreground "#c678dd" :weight bold))
	  ("PENDING" . (:background "#3f444a" :foreground "#ff6c6b" :weight bold))))
  (setq org-capture-templates
	'(("i" "Inbox" entry (file "~/Nextcloud/PRIVE/13_Org/DRI.org") "* TODO %i%?")
	  ("a" "Agenda" entry (file "~/Nextcloud/PRIVE/13_Org/agenda-DRI.org") "* TODO %i%?\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))")))
  (setq org-agenda-custom-commands
	'(("t" "Today" tags-todo "+LEVEL=1+CATEGORY=\"tasks\"|+SCHEDULED<=\"<today>\"|+DEADLINE<=\"<today>\""))))

(setq org-caldav-url "https://next20.produhost.net/remote.php/dav/calendars/alexandre")
(setq org-caldav-calendars
      '((:calendar-id "alexandre-dri" :files ("~/Nextcloud/PRIVE/13_Org/agenda.org")
         :inbox "~/Nextcloud/PRIVE/13_Org/agenda-DRI.org")
       )
)


(use-package magit)
(setq magit-fetch-modules-jobs 16); fetch 16 modules in parallel

(use-package ledger-mode)

(use-package projectile
  :init (projectile-global-mode)
  :config (setq projectile-enable-caching nil)
  :config (setq projectile-project-search-path (cddr (directory-files "~/code" t)))
  :custom (projectile-completion-system 'ivy)
  :bind-keymap ("C-c p" . projectile-command-map))

(use-package counsel-projectile
  :after (counsel projectile)
  :init (counsel-projectile-mode))

(require 'yasnippet)
(yas-global-mode 1)

(use-package which-key
  :init (which-key-mode)
  :config (setq which-key-idle-delay 0.5))

(setq TeX-PDF-mode t)

(require 'mu4e)
;;store org-mode links to messages
(require 'org-mu4e)
;;store link to message if in header view, not to header query
(setq org-mu4e-link-query-in-headers-mode nil)
(setq org-capture-templates
            '(("t" "todo" entry (file+headline "~/todo.org" "Tasks")
                        "* TODO [#A] %?\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n%a\n")))

(setq mail-user-agent 'mu4e-user-agent)
      (setq org-mu4e-link-query-in-headers-mode t)
      (setq mu4e-maildir (expand-file-name "~/Maildir/dri/INBOX"))
      (setq mu4e-get-mail-command "mbsync -a")
      (setq mu4e-sent-folder "/Sent")
      (setq mu4e-drafts-folder "/Drafts")
      (setq mu4e-trash-folder "/Junk")
      (setq mu4e-refile-folder "/INBOX/archives")
      (setq mu4e-context-policy 'pick-first)
      (setq mu4e-change-filenames-when-moving t)
      (setq starttls-use-gnutls t)
      (setq message-send-mail-function 'smtpmail-send-it)
      (setq mu4e-update-interval 300)
      (setq mu4e-use-fancy-chars t)
      (setq mu4e-view-show-addresses t)
      (setq mu4e-headers-show-threads t)
      (setq mu4e-headers-skip-duplicates t)
      (setq mail-user-agent 'mu4e-user-agent)
      (defvaralias 'mu4e-compose-signature 'message-signature)
      (setq-default mu4e-save-multiple-attachments-without-asking t)
      (setq-default mu4e-view-show-addresses t)
      (setq-default mu4e-confirm-quit nil)
      (setq-default mu4e-hide-index-messages t)
      (setq-default mu4e-index-update-in-background t)
      (setq mu4e-compose-in-new-frame nil)
      ;;rename files when moving
      ;;NEEDED FOR MBSYNC
      (setq mu4e-change-filenames-when-moving t)
      (setq mu4e-html2text-command "iconv -c -t utf-8 | ${pkgs.pandoc}/bin/pandoc -f html -t plain")
      (setq mu4e-view-show-images t)
      (when (fboundp 'imagemagick-register-types)
                (imagemagick-register-types))
      (setq message-kill-buffer-on-exit t)

(require 'org-msg)
 (setq org-msg-options "html-postamble:nil H:5 num:nil ^:{} toc:nil author:nil email:nil \\n:t"
	org-msg-startup "hidestars indent inlineimages"
	org-msg-greeting-fmt "\nHi%s,\n\n"
	org-msg-recipient-names '(("alexandre@dri.fr" . "Alexandre"))
	org-msg-greeting-name-limit 3
	org-msg-default-alternatives '((new		. (text html))
				       (reply-to-html	. (text html))
				       (reply-to-text	. (text)))
	org-msg-convert-citation t
	org-msg-signature "

 Regards,

 #+begin_signature
 --
 *Alexandre
 /One Emacs to rule them all/
 #+end_signature")
 (org-msg-mode)
;; Org-Roam basic configuration
  (setq org-directory (concat (getenv "HOME") "/Nextcloud/PRIVE/13_Org"))

  (use-package org-roam
    :after org
    :init (setq org-roam-v2-ack t) ;; Acknowledge V2 upgrade
    :custom
    (org-roam-directory (file-truename org-directory))
    :config
    (org-roam-setup)
    :bind (("C-c n f" . org-roam-node-find)
           ("C-c n r" . org-roam-node-random)		    
           (:map org-mode-map
                 (("C-c n i" . org-roam-node-insert)
                  ("C-c n o" . org-id-get-create)
                  ("C-c n t" . org-roam-tag-add)
                  ("C-c n a" . org-roam-alias-add)
                  ("C-c n l" . org-roam-buffer-toggle)))))
(autoload 'markdown-mode "markdown-mode"
   "Major mode for editing Markdown files" t)
(add-to-list 'auto-mode-alist
             '("\\.\\(?:md\\|markdown\\|mkd\\|mdown\\|mkdn\\|mdwn\\)\\'" . markdown-mode))

(autoload 'gfm-mode "markdown-mode"
   "Major mode for editing GitHub Flavored Markdown files" t)
(add-to-list 'auto-mode-alist '("README\\.md\\'" . gfm-mode))